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Epigenetics Python Packages

Python packages with the GitHub topic epigenetics. Sorted by relevance, with stars and monthly downloads.
FOXOBioScience
methylprep

Python-based preprocessing software for Illumina methylation arrays

4K 42 16
brj0
mepylome

Python package for processing Infinum DNA methylation arrays

1K 10 1
liguowang
cpgtools

Tools to analyze and visualize DNA methylation data

904 45 13
fraenkel-lab
garnet

No description available

887 4 2
eliopato
pylluminator

Python package for processing and analyzing Illumina DNA methylation data

718 11 1
Genome-Function-Initiative-Oxford
zen-norm

ZEN-norm is a Python package for normalising bigWigs of genomic signal, reversing prior normalisation and benchmarking normalisation method performance.

697 1 0
KarrLab
bpforms

Unambiguous representation of modified DNA, RNA, and proteins

597 7 2
nanoporetech
megalodon

Nanopore base calling augmentation.

559 204 27
BIMSBbioinfo
janggu

Deep learning infrastructure for genomics

523 258 35
cangermueller
deepcpg

Deep neural networks for predicting CpG methylation

448 153 71
aryeelab
hichipper

A preprocessing and QC pipeline for HiChIP data

433 40 15
MuteJester
pyncbi

A Python API library for exploration and data retrieval from NCBI

380 3 3
andrewdavidsmith
pyxfr

The Transferase Python API

323 4 0
bioinfomaticsCSU
deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads

317 118 23
caleblareau
mgatk

mgatk: mitochondrial genome analysis toolkit

293 112 28
nanoporetech
ont-tombo

Analysis of raw nanopore sequencing data.

272 233 54
ChaorongC
mesa-cfdna

A flexible and sensitive method for capturing and integrating multimodal epigenetic information from cell-free DNA (cfDNA) using a single experimental assay.

231 3 1
caleblareau
bap-atac

Bead-based scATAC-seq data Processing.

201 33 8
eliopato
pylluminator-modern

Tool to preprocess, analyze and visualize DNA methylation data from Illumina micro-arrays

74 11 1
    • Data from PyPI, GitHub, ClickHouse, and BigQuery