Epidemiology Python Packages

epiweeks

Epidemiological weeks calculation based on CDC (MMWR) and ISO week numbering systems

225K 20 6

amr

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

28K 110 23

aihw-mcp

Query the Australian Institute of Health and Welfare in plain English from Claude or any MCP client. Mortality (GRIM/MORT), cancer incidence, health expenditure, youth justice detention, and the public hospitals register.

9K 0 0

emod-malaria

Source files for building the IDM EMOD disease transmission model.

3K 106 52

covsirphy

COVID-19 data analysis with phase-dependent SIR-derived ODE models

2K 112 44

zepid

Epidemiology analysis package

2K 155 32

emod-hiv

PyPI distribution of EMOD for the running HIV and STI simulations

2K 106 52

pyseqtarget

Estimation of the observational analogs of the intention-to-treat and per-protocol effects of hypothetical treatment strategies

2K 2 0

metawards

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

2K 14 6

epispot-nightly

A tool for modeling infectious diseases.

1K 18 6

emod-common

Source files for building the IDM EMOD disease transmission model.

1K 106 52

bio-epidemiology-ner

Recognize bio-medical entities from a text corpus

1K 133 9

seirsplus

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

980 675 220

epitator

Annotators for extracting epidemiological information from text.

937 42 10

episia

Python toolkit for epidemiological modelling and reporting. SIR/SEIR/SEIRD compartmental models, sensitivity analysis, interactive visualisations, and automated HTML/Markdown/JSON reports, built for low-resource health contexts.

716 5 0