Epidemics Python Packages

ndlib

Network Diffusion Library - (for NetworkX and iGraph)

epydemix

epydemix, the ABC of epidemics

metawards

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

covid-surge

Covid-Surge is a utility for computing and comparing mortality surge periods of communities afflicted by the COVID-19 virus pandemic.

seirsplus

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

epyestim

Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers

graph-tiger

Python toolbox to evaluate graph vulnerability and robustness (CIKM 2021)

junevis

A dashboard to analyze the results of the JUNE epidemic and intervention simulator

compartmental

Vectored GPU based compartmental simulations. Easy to use. With some ABC (Approximate Bayesian Computation) utils

contagion

Python package for node immunization and network contagion simulation

dynsis

Python wrapper for dynSIS Fortran simulations

cosasi

COntagion Simulation And Source Identification

outbreaker

Explore WHO Disease Outbreak News

hypercontagion

Library for epidemics on hypergraphs

mesa-sir

A Mesa extension for SIR models