Epidemics Python Packages

ndlib

Network Diffusion Library - (for NetworkX and iGraph)

epydemix

epydemix, the ABC of epidemics

covid-surge

Covid-Surge is a utility for computing and comparing mortality surge periods of communities afflicted by the COVID-19 virus pandemic.

metawards

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

seirsplus

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

graph-tiger

Python toolbox to evaluate graph vulnerability and robustness (CIKM 2021)

contagion

Python package for node immunization and network contagion simulation

compartmental

Compartmental models with ABC inference optimized for GPU use

junevis

Visualization for the JUNE epidemic and intervention simulation tool

epyestim

Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers

cosasi

COntagion Simulation And Source Identification: a Python package for graph diffusion source inference

dynsis

Implementation of SIS epidemic model for large and heterogeneous networks using Fortran.

hypercontagion

Library for epidemics on hypergraphs

mesa-sir

Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.

outbreaker

Explore WHO Disease Outbreak News