PyRank

Epidemic Simulations Python Packages

Python packages with the GitHub topic epidemic-simulations. Sorted by monthly downloads, with stars and forks.
lisphilar
covsirphy

CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

2K 113 44
metawards
metawards

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

1K 14 6
ryansmcgee
seirsplus

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

814 681 218
DataForScience
epidemik

Compartmental Epidemic Models in Python

772 16 2
rajeshrinet
pyross

PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross

411 167 56
lueckem
sponet

Spreading Processes on Networks

361 4 2
QuanticPony
compartmental

Vectored GPU based compartmental simulations. Easy to use. With some ABC (Approximate Bayesian Computation) utils

144 0 0
lueckem
cnvm

Continuous-time noisy voter model

122 0 0
healthbadge
episimmer

Episimmer is an Epidemic Simulation Framework for Decision Support. It is a highly flexible system that can be easily configured to help take decisions during an epidemic in closed communities like university campuses and gated communities.

120 16 3
nwlandry
hypercontagion

Library for epidemics on hypergraphs

60 13 3
miladrezanezhad
sir-epidemic-simulator-milad

SIR/SEIR epidemic simulator with network spread, ML forecasting, and scenario comparison

60 8 0
miladrezanezhad
sir-epidemic

SIR/SEIR epidemic simulator with network spread, ML forecasting, and scenario comparison

58 8 0