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Entrez Python Packages

Python packages with the GitHub topic entrez. Sorted by monthly downloads, with stars and forks.
u9401066
pubmed-search-mcp

MCP SDK v2 server for PubMed and multi-source biomedical research, with resilient search, full text, citations, and tenant-safe deployment.

5K 28 9
PFreda-Lab
okf-loremaster

Multi-agentic biomedical literature evidence extraction, curation, and summarization from PubMed/PMC in Open Knowledge Format (OKF) for downstream machine learning, feature selection, and agentic applications.

414 2 0
krassowski
easy-entrez

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

307 82 7
andgineer
http-stream-xml

Parse HTTP response as stream, by chunks. Example for NCBI (PubMed) Entrez.

263 1 0
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
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