Ensembl Python Packages

gget

🧬 gget enables efficient querying of genomic reference databases

genomepy

genes and genomes at your fingertips

openomicsbench

Traceable omics benchmarks with multi-method matrices, regression gates, portable bundles and sequence tools.

biomcp-server

🧬 BioMCP — bioinformatics MCP server: 83 tools · 43 databases · PubMed/NCBI/BLAST/PDB/UniProt/enrichment · `pip install biomcp-server` · 生信 MCP 服务器

pypgatk

Python tools for proteogenomics analysis toolkit

transcriptqc

Is this transcript right for clinical reporting? manecheck: MANE Select / Plus Clinical check for RefSeq and Ensembl transcripts, offline from a bundled MANE snapshot.

pyensemblrest

A client for the Ensembl REST API written in the Python programming language

icgc-data-parser

To automate data collection from ICGC database.

ggetrs

Efficient querying of biological databases

pgatk

Python tools for proteogenomics analysis toolkit