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Enrichment Analysis Python Packages

Python packages with the GitHub topic enrichment-analysis. Sorted by relevance, with stars and monthly downloads.
zqfang
gseapy

Gene Set Enrichment Analysis in Python

139K 695 135
scverse
decoupler

Python package to perform enrichment analysis from omics data.

50K 268 36
pachterlab
gget

🧬 gget enables efficient querying of genomic reference databases

37K 1K 85
DBRetina
dbretina

DBRetina Python Package

4K 1 3
stracquadaniolab
pygna

A Python package for gene network analysis

937 33 6
qwerty239qwe
biodbs

Unified Python interface for biological databases

536 1 1
harryhaller001
keggtools

Library for KEGG pathway enrichment analysis

464 19 3
jsmccabe1
sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.

350 5 0
JLSteenwyk
gokit

Command-line toolkit for Gene Ontology (GO) enrichment analysis

335 8 0
dbespiatykh
gopiscator

GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.

206 0 0
gero-science
ct-validation

Benchmarking gene-indication evidence against clinical trial outcomes

160 0 0
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