PyRank

Enrichment Analysis Python Packages

Python packages with the GitHub topic enrichment-analysis. Sorted by relevance, with stars and monthly downloads.
zqfang
gseapy

Gene Set Enrichment Analysis in Python

208K 703 137
pachterlab
gget

🧬 gget enables efficient querying of genomic reference databases

46K 1K 92
scverse
decoupler

Python package to perform enrichment analysis from omics data.

45K 272 37
DBRetina
dbretina

DBRetina Python Package

2K 1 3
qwerty239qwe
biodbs

Unified Python interface for biological databases

839 2 1
stracquadaniolab
pygna

Geneset Network Analysis

688 33 6
gero-science
ct-validation

Benchmarking gene-indication evidence against clinical trial outcomes

576 0 0
harryhaller001
keggtools

Library for KEGG pathway enrichment analysis

544 19 3
JLSteenwyk
gokit

Command-line toolkit for Gene Ontology (GO) enrichment analysis

388 9 0
dbespiatykh
gopiscator

GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.

276 0 0
jsmccabe1
sceptr-profiling

Statistical Characterisation of Expression Profiles in Transcriptomes

167 5 0