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Ena Python Packages

Python packages with the GitHub topic ena. Sorted by monthly downloads, with stars and forks.
sorenwacker
metaseed

Create, edit, and validate scientific metadata against a standard (MIAPPE, ISA, Darwin Core, DiSSCo, ENA, PRIDE, MetaboLights, FAIRDOM-SEEK) from a YAML profile — CLI, web interface, Python API, and MCP server.

7K 2 1
HUDongpin
ena-python

Epistemic Network Analysis in pure Python — a port of the R package rENA, verified numerically against it. The project started from July 2025. pip install ena-python

181 0 1
bebatut
enasearch

A Python library for interacting with ENA's API

145 25 6
tbcgit
omdctk

OMD Curation Toolkit is a python package designed for the download and curation of metadata and fastq files of public omics datasets.

86 7 1
maximilianh
multisub

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

34 36 2
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology