PyRank

Electrophysiology Python Packages

Python packages with the GitHub topic electrophysiology. Sorted by relevance, with stars and monthly downloads.
openbraininstitute
efel

Electrophys Feature Extraction Library

55K 9 0
SpikeInterface
probeinterface

Python package to handle probe layout, geometry and wiring to device.

40K 79 47
SpikeInterface
spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

35K 783 260
NeuralEnsemble
elephant

Elephant is the Electrophysiology Analysis Toolkit

24K 239 96
openbraininstitute
bluepyopt

Blue Brain Python Optimisation Library

16K 9 0
int-brain-lab
mtscomp

Multichannel time series lossless compression in pure Python based on NumPy and zlib

16K 46 10
cortex-lab
phylib

Lightweight electrophysiological data analysis library

15K 16 29
Npix-routines
npyx

Utilities to load, process, and plot Neuropixels data in Python.

9K 146 32
openbraininstitute
bluepyefe

BluePyEfe: Blue Brain Python E-feature extraction

7K 4 0
swharden
pyabf

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

7K 115 36
SpikeInterface
spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

6K 117 48
MouseLand
kilosort

Fast spike sorting with drift correction

6K 608 287
Julie-Fabre
bombcell

Automated quality control, curation and neuron classification of spike-sorted electrophysiology data. Available in MATLAB and in Python.

3K 230 58
ZitongLu1996
neurora

A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)

3K 198 34
GazzolaLab
miv-os

Python software for analysis and computing framework used in MiV project.

2K 16 10
Eden-Kramer-Lab
spectral-connectivity

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

2K 137 49
VirtualBrainLab
ephys-link

A Python Socket.IO server that allows any Socket.IO-compliant application to communicate with manipulators used in electrophysiology experiments.

2K 3 1
cortex-lab
phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

2K 411 184
cwindolf
dartsort

A modular spike sorter written in Python and PyTorch

2K 28 10
GWeindel
hsmm-mvpy

Repository for the hmp python package

1K 52 11
BlueBrain
emodel-generalisation

Generalisation of neuronal electrical models with MCMC

1K 5 5
SpikeInterface
spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

1K 20 20
calderast
jdb-to-nwb

Converts electrophysiology, photometry, and behavioral data for the hex maze task used by the Berke Lab at UCSF to NWB format.

1K 6 2
LorenFrankLab
spyglass-neuro

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

1K 116 55