PyRank

Ehr Python Packages

Python packages with the GitHub topic ehr. Sorted by relevance, with stars and monthly downloads.
som-shahlab
meds-reader

A high-performance database and Python reader interface for MEDS datasets

7K 20 1
theislab
ehrdata

A datastructure for EHR data

4K 13 6
theislab
ehrapy

Electronic Health Record Analysis with Python.

2K 350 45
healthchainai
healthchain

Python SDK for healthcare AI: connect models to live EHR systems, skip the integration tax 💫 🏥

2K 197 37
Medial-EarlySign
medpython

Medial Research Libs Infrastructure

2K 4 0
SamoraHunter
pat2vec

A comprehensive Python package for healthcare data engineering, designed to extract, transform, and feature engineer patient data from CogStack-based electronic health record (EHR) datalakes. It provides tools for cohort building, batch data processing, clinical note analysis, and creating machine learning-ready datasets.

686 2 0
rodrigobnogueira
faker-healthcare-provider

Generate realistic healthcare test data in 6 languages (en, es, pt, zh, fr, de): 150+ diseases with correlated ICD-10 codes, medications, symptoms, and more

603 3 0
VectorInstitute
cycquery

A tool to query EHR databases

397 2 0
fhirpack
fhirpack

FHIRPACK (FHIR Python Analysis Client and Kit) is a general purpose FHIR client that simplifies the access, analysis and representation of FHIR and EHR data using PANDAS, an ETL philosophy and a functional syntax.

323 50 4
tiadams
cleandat

Python functions to facilitate the pre-processing of data for ML tasks in a clinical context.

222 1 0
Medial-EarlySign
medpython-etl

Medial EarlySign ETL Library

191 2 0
corazonlabs
lemonpie

A deep learning library for Electronic Health Record (EHR) data

159 3 1
barahona-research-group
ehrax

io+hdf5+lazy-loading+processing-pipelines for EHRs and generic PyTrees for JAX friendly tasks, mainly ML

139 0 0
queelius
chartfold

Patient-facing tool for consolidating personal health data from multiple EHR systems into a single SQLite database

130 2 0
The-Swarm-Corporation
mai-dx

An open source implementation of the paper: "Sequential Diagnosis with Language Models" From Microsoft Built with Swarms Framework

106 58 12
rvandewater
yaib

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

102 97 33
openemr
openemr-agent

The most popular open source electronic health records and medical practice management solution.

86 5K 3K