Ecology Python Packages

pygbif

GBIF Python client

pytorchwildlife

Microsoft AI for Good Lab — Biodiversity research hub. Open-source AI models, edge devices, and tools for biodiversity monitoring and conservation. Hosts SPARROW-Studio at /SPARROW-Studio. Your source for MegaDetector, SPARROW, PytorchWildlife, Bioacoustics, and more.

niamoto

Biodiversity publishing tool for ecological data, from import to static portal generation.

megadetector

MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.

pingmapper

Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat

wildlife-datasets

WildlifeDatasets: An open-source toolkit for animal re-identification

audio-workbench

Python wrapper for Audio Workbench Player (HTML/Streamlit embedding)

signavis

Interactive waveform + spectrogram audio player for analysis, annotation, and embeddable previews (Web, Streamlit, Gradio)

megadetector-utils

Utility code associated with the MegaDetector project.

pyphenology

Plant phenology models in python with a scikit-learn inspired API

stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

aoh

Area of Habitat calculation code for biodiversity assessment pipelines

biolith

Bayesian Ecological Modeling in Python

pyforestscan

A python package for calculating forest structural metrics from airborne point clouds.

phenopype

A phenotyping pipeline for python

nlmrs

A Rust crate for building Neutral Landscape Models.

cpforager

Python package to handle data gathered from biologgers (GPS, TDR, AXY) attached to central-place foraging seabirds. The idea is to make movement ecology data a bit easier to process.

electivity

Ecological electivity and forage indices

gridfia

Spatial raster analysis for USDA Forest Service BIGMAP data

hawkears

Scan audio recordings and identify birds, amphibians and other classes.

eco-code-analyzer

Eco-Code Analyzer is a Python library that analyzes code for its ecological impact and provides a score based on various factors such as energy efficiency, resource usage, and code optimizations.

eodal

The Earth Observation Data Analysis Library EOdal

audio-workbench-player

Interactive waveform + spectrogram audio player for analysis, annotation, and embeddable previews (Web, Streamlit, Gradio)

cfo

Python wrappers for accessing Forest Observatory data via the Salo API