Ecology Python Packages

pygbif

GBIF Python client

18K 149 39

megadetector

MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.

16K 298 52

pytorchwildlife

Microsoft AI for Good Lab — Biodiversity research hub. Open-source AI models, edge devices, and tools for biodiversity monitoring and conservation. Your source for MegaDetector, SPARROW, PytorchWildlife, Bioacoustics, and more.

7K 1K 294

pyphenology

Plant phenology models in python with a scikit-learn inspired API

6K 36 11

niamoto

Biodiversity publishing tool for ecological data, from import to static portal generation.

4K 4 1

pingmapper

Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat

3K 86 13

megadetector-utils

MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.

3K 298 52

wildlife-datasets

WildlifeDatasets: An open-source toolkit for animal re-identification

3K 182 25

pyforestscan

A python package for calculating forest structural metrics from airborne point clouds.

2K 85 8

zamba

A Python package for identifying hundreds of kinds of animals, training custom models, and estimating distance from camera trap videos and images

2K 160 39

stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

983 26 1

aoh

Area of Habitat calculation code for biodiversity assessment pipelines

947 5 3

biolith

Bayesian Ecological Modeling in Python

888 40 2

phenopype

A phenotyping pipeline for Python

753 13 4

envoi-geospatial

Automated feature extraction from environmental data sources for ecological and spatial analysis.

689 0 0

markinp

Read, validate, and build Program MARK encounter-history (.inp) files

673 1 0

nlmrs

A Rust crate for building Neutral Landscape Models.

661 4 0

cpforager

Python package to handle data gathered from biologgers (GPS, TDR, AXY) attached to central-place foraging seabirds. The idea is to make movement ecology data a bit easier to process.

631 6 3