Ecology Python Packages

pygbif

GBIF Python client

wildlife-datasets

WildlifeDatasets: An open-source toolkit for animal re-identification

megadetector

MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.

pytorchwildlife

Microsoft AI for Good Lab — Biodiversity research hub. Open-source AI models, edge devices, and tools for biodiversity monitoring and conservation. Your source for MegaDetector, SPARROW, PytorchWildlife, Bioacoustics, and more.

resolve-core

Predict sample attributes from compositional data — torch-based, C++/CUDA core, Python & R

pingmapper

Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat

viame

Video and Image Analytics for Multiple Environments

niamoto

Biodiversity publishing tool for ecological data, from import to static portal generation.

megadetector-utils

MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.

stemflow

A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

phenopype

A phenotyping pipeline for Python

biolith

Bayesian Ecological Modeling in Python

pyforestscan

A python package for calculating forest structural metrics from airborne point clouds.

aoh

Area of Habitat calculation code for biodiversity assessment pipelines

hawkears

Scan audio recordings and identify birds, amphibians and other classes.

nlmrs

A Rust crate for building Neutral Landscape Models.

cpforager

Python code to handle data gathered from biologgers (GPS, TDR, AXY) attached to central-place foraging seabirds. The idea is to make movement ecology data a bit easier to process.

envoi-geospatial

Automated feature extraction from environmental data sources for ecological and spatial analysis.

signavis

Interactive waveform + spectrogram audio player for analysis, annotation, and embeddable previews (Web, Streamlit, Gradio)

pyphenology

Plant phenology models in python with a scikit-learn inspired API

gridfia

Turn FIA plot data into gridded maps of biomass, carbon & timber volume — outputs GeoTIFF and Zarr

eco-code-analyzer

Eco-Code Analyzer is a Python library that analyzes code for its ecological impact and provides a score based on various factors such as energy efficiency, resource usage, and code optimizations.

zamba

A Python package for identifying hundreds of kinds of animals, training custom models, and estimating distance from camera trap videos and images

markinp

Read, validate, and build Program MARK encounter-history (.inp) files