Dna Python Packages

biopython

Official git repository for Biopython (originally converted from CVS)

pyfaidx

Efficient pythonic random access to fasta subsequences

pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

galaxy-util

Data intensive science for everyone.

galaxy-tool-util

Data intensive science for everyone.

galaxy-tool-util-models

Data intensive science for everyone.

pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

seqfold

nucleic acid folding

snps

tools for reading, writing, generating, merging, and remapping SNPs

galaxy-objectstore

Data intensive science for everyone.

galaxy-job-metrics

Data intensive science for everyone.

orfipy

Fast and flexible ORF finder

polyply

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

galaxy-containers

Data intensive science for everyone.

galaxy-data

Data intensive science for everyone.

galaxy-app

Data intensive science for everyone.

galaxy-job-execution

Data intensive science for everyone.

galaxy-files

Data intensive science for everyone.

galaxy-config

Data intensive science for everyone.

galaxy-auth

Data intensive science for everyone.

proteinmotion

Animate proteins, DNA, and RNA in Python with a Manim-inspired API, native GPU rendering, and Blender EEVEE.

galaxy-web-framework

Data intensive science for everyone.

bioforge

High-performance bioinformatics engine for edge computing. 5-bit encoding, vectorised alignment, DNA→protein translation, and a minimap2-style genome mapper — whole pipeline in C behind a thin NumPy cover. pip install bioforge.

galaxy-schema

Data intensive science for everyone.