Distance Matrix Python Packages

routingpy

🌎 Python library to access all public routing, isochrones and matrix APIs in a consistent manner.

rancoord

RanCoord is a Python package for random sampling of geographic coordinates

clusttraj

Python script that receives a molecular dynamics or Monte Carlo trajectory and performs agglomerative clustering to classify similar structures.

fastjsd

Fast pairwise Jensen-Shannon distance matrices for Python.

pyloghub

The official Python library for the Log-hub API

pydist2

A python library for computing distances.

protein-cluster-conformers

Clusters protein chains based on CA distance difference

clusopt-core

Clustream, Streamkm++ and metrics utilities C/C++ bindings for python

chunked-ed

This package was developed to make Energy Distance estimation more memory-efficient by computing pairwise distances in blocks rather than all at once.