Dimension Reduction Python Packages

boostaroota

A fast xgboost feature selection algorithm

augmented-pca

Repository for the AugmentedPCA Python package.

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

tapkee

A flexible and efficient С++ template library for dimension reduction

cytofdr

CyTOF Dimension Reduction Framework

dyca

Dynamical Component Analysis Python Code

ristretto

ristretto: Randomized Dimension Reduction Library

flexinet

Flexible torch neural network architecture API

dimae

Dimensionality Reduction Autoencoder built in TF Keras

scarf-toolkit

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.