Dimension Reduction Python Packages

boostaroota

A fast xgboost feature selection algorithm

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

cytofdr

A Python package for dimension reduction and evaluation workflows with CyTOF data.

augmented-pca

Python implementations of supervised and adversarial linear factor models.

tapkee

A flexible and efficient С++ template library for dimension reduction

ristretto

Randomized Dimension Reduction Library

dyca

Dynamical Component Analysis Python Code

flexinet

flexinet: flexible torch neural network composition

dimae

Dimensionality Autoencoder

scarf-toolkit

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.