Digital Pathology Python Packages

cucim

cuCIM - RAPIDS GPU-accelerated image processing library

27K 470 92

wsidicom

Python package for reading DICOM WSI file sets.

25K 52 11

tiffslide

TiffSlide - cloud native openslide-python replacement based on tifffile

23K 107 13

cucim-cu12

cuCIM - RAPIDS GPU-accelerated image processing library

19K 470 92

torchstain

Stain normalization tools for histological analysis and computational pathology

9K 191 30

opentile

Python library for reading tiles from wsi tiff-files.

8K 20 6

aignostics

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

7K 14 4

cucim-cu13

cuCIM - RAPIDS GPU-accelerated image processing library

5K 470 92

tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

3K 557 113

lazyslide

Accessible and interoperable whole slide image analysis for digital pathology in Python

2K 328 32

histolab

Library for Digital Pathology Image Processing

2K 467 67

cellseg-models-pytorch

Encoder-Decoder Cell and Nuclei segmentation models

1K 108 5

kfbslide

纯 Python KFB（KFBio）数字病理切片读取库，提供与 OpenSlide 完全兼容的 API

1K 16 2

paquo

PAthological QUpath Obsession - QuPath and Python conversations

998 137 20

pathopatch

PathoPatcher is a Python project designed for accelerating Whole Slide Image Preprocessing, employing AI-based preprocessing techniques with features like annotation handling, color normalization, and configurable parameters

933 13 9

cucim-cu11

cuCIM - RAPIDS GPU-accelerated image processing library

902 470 92

pathml

Tools for computational pathology

633 465 87

deepliif

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24, MICCAI'26]

594 263 90