Diffusion Mri Python Packages

dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

qsiprep

Preprocessing of diffusion MRI

nlsam

The reference implementation for the Non Local Spatial and Angular Matching (NLSAM) denoising algorithm for diffusion MRI

qsiprep-container

qsiprep is a non-DTI diffusion-weighted image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

ivimnet

Physics-informed deep learning IVIM model

autodmri

Automated characterization of noise distributions in diffusion MRI data

pipetography

Nipype and tractography!

dmipy

dmipy: diffusion microstructure imaging in python

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data.

eddymotion

Open-source eddy-current and head-motion correction for dMRI.

dpr

Diffusion profile realignment - Making your along-tract analysis reliable

erwin

Quantitative MRI toolbox in Python

dvoryan

Reproducible and efficient diffusion kurtosis imaging in Python.

dkmri

Reproducible and efficient diffusion kurtosis imaging in Python.

pydesigner-dwi

Python Port of NYU's Designer pipeline for dMRI processing

disimpy

Massively parallel Monte Carlo diffusion MR simulator written in Python.

utracto

Package facilitating the tracking of sub-cortical U-Fibers

dkmri-win

Reproducible and efficient diffusion kurtosis imaging in Python.