Diffusion Mri Python Packages

dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

gradlint

Fast gradient-scheme QC, b-vector flip detection, and repair for diffusion MRI and tractography pipelines.

qsiprep

Preprocessing of diffusion MRI

nlsam

The reference implementation for the Non Local Spatial and Angular Matching (NLSAM) denoising algorithm for diffusion MRI

qsiprep-container

qsiprep is a non-DTI diffusion-weighted image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

dmipy

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

autodmri

Automated characterization of noise distributions in diffusion MRI data

pipetography

Pre/Post-processing pipeline for tractography wrapped around nipype and mrtrix3

eddymotion

Open-source eddy-current and head-motion correction for dMRI.

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

dpr

Implementation of "Reducing variability in along-tract analysis with diffusion profile realignment".

erwin

Quantitative MRI toolbox in Python

ivimnet

Physics-informed deep learning IVIM model

dkmri

Reproducible and efficient diffusion kurtosis imaging in Python.

dvoryan

Reproducible and efficient diffusion kurtosis imaging in Python.

disimpy

Massively parallel diffusion MR simulator

pydesigner-dwi

Python Port of NYU's Designer pipeline for dMRI processing

utracto

Package facilitating the tracking of sub-cortical U-Fibers

dkmri-win

Reproducible and efficient diffusion kurtosis imaging in Python.