Diffusion Maps Python Packages

palantir

Single cell trajectory detection

manifolds-rs

Various embedding methods such as UMAP, tSNE, diffusion maps etc. implemented in Rust. Now with Python bindings

mapss-measures

The code for the MAPSS measures for source separation evaluation (ICLR, 2026)

pydesigner-dwi

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

topometry-nosc

An independently maintained, heavily modified fork of TopOMetry: geometry-first topological dimensionality reduction and manifold learning.

tati

Sampling-based approach to analyse neural networks using TensorFlow