Differential Expression Analysis Python Packages

micti

Feature extraction approach in single-cell gene expression profiling for cell-type marker identification.

crispyx

crispyx is a Python package for scalable CRISPR and Perturb-seq screen analysis on disk-backed AnnData files. It provides streaming quality control, normalization, pseudobulk aggregation, and differential expression without loading the full count matrix into memory.

raptor-rnaseq

RNA-seq Analysis Pipeline Testing and Optimization Resource