Dicom Python Packages

imageio

Python library for reading and writing image data

pydicom

Read, modify and write DICOM files with python code

nibabel

Python package to access a cacophony of neuro-imaging file formats

pylibjpeg

A Python framework for decoding JPEG images, with a focus on supporting pydicom

pylibjpeg-openjpeg

A J2K, JP2 and HTJ2K plugin for pylibjpeg

pylibjpeg-libjpeg

A JPEG, JPEG-LS and JPEG XT plugin for pylibjpeg

pynetdicom

A Python implementation of the DICOM networking protocol

dicomweb-client

Python client for DICOMweb RESTful services

wsidicom

Python package for reading DICOM WSI file sets.

highdicom

High-level DICOM abstractions for the Python programming language

pylibjpeg-rle

Fast DICOM RLE plugin for pylibjpeg

medpy

Medical image processing in Python

rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

dicom-validator

Simple DICOM validator based on DocBook DICOM specs

aignostics

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

dicomrttool

Services for reading DICOM files, RT structures, and dose files, as well as tools for converting numpy prediction masks back to an RT structure.

dicom-numpy

Properly generate a 3D numpy array from a set of DICOM files.

dicom-echo

A blazingly fast implementation of the C-ECHO DICOM procedure 🔥

med-imagetools

Med-Imagetools: Transparent and Reproducible Medical Image Processing Pipelines in Python

pydicom-seg

Python package for DICOM-SEG medical segmentation file reading and writing

protocol

generic framework to develop protocols, with an initial focus medical imaging acquisition

pymedphys

A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science.

deid

best effort anonymization for medical images using python