Denoising Python Packages

dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

meegkit

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python

careamics

Deep-learning library for image restoration.

deepinv

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

pawflim

Wavelet denoising of phasors.

biapy

Open source Python library for building bioimage analysis pipelines

pycirclemedianfilter

Fast median filter for circle-valued data, for example signals or images describing phase or orientation

l1tv

Denoising/reconstruction of piecewise constant signals using the L1TV model

topaz-em

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

itk-totalvariation

External Module for Total Variation Algorithms, providing wrap for https://github.com/albarji/proxTV

dinscribe

Audio denoising and transcription pipeline using Demucs, Silero VAD, and Whisper

dinnote

Audio denoising, VAD, speaker diarization, and transcription pipeline using Demucs, Silero VAD, pyannote, and Whisper

careamics-napari

napari plugin for CAREamics

multimodal-fusion

Fuse multi-modal electron microscopy datasets using inverse problems

audiotame

A command-line tool that normalizes audio and reduces noise. Optional Gradio Web UI

vapoursynth-nlm-ispc

Non-local means denoise filter, drop-in replacement of the venerable KNLMeansCL for VapourSynth, but without the OpenCL dependency (CPU only)

meteor-maps

bringing you the best difference maps

aydin

Aydin — User-friendly, Fast, Self-Supervised Image Denoising for All.

mapfusion

Multi-Modal Electron Microscopy Data Fusion for Spectral Maps

nsnet2-denoiser

NSNet2 Deep Noise Suppression (DNS) package

qmm

Python Quadratic Majorization-Minimization (MM) optimization algorithms of half-quadratic criteria. Inverses problems, image restoration, denoising, ...

condat-tv

Python wrapper for the fast TV denoising algorithm by Laurent Condat

denoisers

Simple PyTorch Denoisers for Waveform Audio

claritycore

Next-generation Open Source toolkit for low-level vision. Engineered for state-of-the-art performance in image and video pixel2pixel tasks, including Super-Resolution, Denoising, Deblurring, and more.