Denoising Python Packages

dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

102K 849 516

meegkit

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python

11K 230 57

ambidose

AmbiDose is a conservative, cell-aware Python toolkit for ambient RNA correction in droplet scRNA-seq. It estimates sample-specific ambient profiles and per-cell doses, protects native cell-type signals, preserves sparsity, and never inflates counts.

5K 2 0

deepinv

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

3K 827 220

careamics

Deep-learning library for image restoration.

3K 154 24

biapy

Open source Python library for building bioimage analysis pipelines

2K 214 45

pawflim

Wavelet denoising of phasors.

2K 4 0

denoisers

Simple PyTorch Denoisers for Waveform Audio

2K 43 2

pycirclemedianfilter

Fast median filter for circle-valued data, for example signals or images describing phase or orientation

2K 16 5

careamics-napari

napari plugin for CAREamics

1K 7 3

itk-totalvariation

External Module for Total Variation Algorithms, providing wrap for https://github.com/albarji/proxTV

1K 10 10

vs-temporalfix

Add Temporal Coherence to AI Upscales in VapourSynth

1K 40 3

topaz-em

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

897 219 75

l1tv

Denoising/reconstruction of piecewise constant signals using the L1TV model

723 9 1

multimodal-fusion

Fuse multi-modal electron microscopy datasets using inverse problems

536 6 3

ct-segmentation-toolkit

Supervised (U-Net), unsupervised (Otsu, k-means, GMM), and label-free spectral-spatial (SOM) segmentation of scientific image stacks, with self-supervised Noise2Inverse denoising.

530 0 0

audiotame

A command-line tool that normalizes audio and reduces noise. Optional Gradio Web UI

517 4 0

meteor-maps

bringing you the best difference maps

486 8 2

qmm

Python Quadratic Majorization-Minimization (MM) optimization algorithms of half-quadratic criteria. Inverses problems, image restoration, denoising, ...

483 18 4

mapfusion

Fuse multi-modal electron microscopy datasets using inverse problems

439 6 3