Deep Generative Model Python Packages

scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

scvi

Deep probabilistic analysis of single-cell and spatial omics data

scmidas

PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).

causalegm

CausalEGM: an encoding generative modeling approach to dimension reduction and covariate adjustment in causal inference with observational studies

scvega

VEGA: VAE Enhanced by Gene Annotations

pyroundtrip

Roundtrip: density estimation with deep generative neural networks