Data Provenance Python Packages

aiida-core

The official repository for the AiiDA code

datajoint

Relational Workflows: where database schemas define executable data pipelines.

urgap

urgap - unified resource governance and data provenance

roar-cli

Run Observation & Artifact Registration

openomicsbench

Traceable omics benchmarks with multi-method matrices, regression gates, portable bundles and sequence tools.

pageledger

Auditable page-level run ledger for OCR and document extraction

gnosis-markdown

Web scraper & crawler → clean Markdown with byte-level SHA-256 provenance + WARC archival for LLM/RAG knowledge bases

wheeler

Turn Claude Code into an interactive scientific workspace: workflow, file system, and knowledge graph.

calcfinc

Auditable financial ratios for any entity. Exact Decimal maths, zero dependencies. Every result carries its formula, input facts and limitations, missing data gives None with a reason. SEC and Indian XBRL adapters, bank and insurer aware.

bioextract

Stable, provenance-aware domain access to official biological database snapshots.

outcome-receipts

Beta. Funder outcome reports where every reported figure is a receipt: the exact query, the rows it drew from, a content hash of that slice, and a timestamp. Deterministic, offline, and fail-closed. Export is refused if a number in the narrative, or in a chart or comparison claim, cannot be traced to the data that produced it.

steganodf

Steganography and watermarking for tabular data: hide a secret message inside a CSV or Parquet file

dtool-lookup-gui

Graphical user interface for dtool and dserver written in Python and GTK3.

ndos

Recover, describe and query animal neuroscience data you did not organise yourself

positorium

An embedded evidence database for facts that disagree—preserving source, time, certainty, and history.

interbolt

Blocks AI agent tool calls acting on untrusted data before they cause damage.

biology-as-code

Biology as Code: Standardizing Nutrition Science for Preventive Medicine https://d1l2n4e9e74m3d.cloudfront.net/#cascade

baion-vault-method

A file-based governance layer for human–AI work where agents do not get to invent state. Receipts establish state; a zero-dependency checker enforces it.

empirical-data-contracts

Typed Pydantic contracts for reproducible empirical data: identity, provenance, grain, geography, time, coverage, QA and run manifests.

aiida-qp2

AiiDA plugin for Quantum Package 2.0

statqa

Extract Stats Q/A from Tables With Provenance

openauc

Open-source Python toolkit for ingesting, validating, plotting, generating and archiving analytical ultracentrifugation data.

trace-file-lineage

Find which script, notebook, data, command, or AI agent produced a file — locally, with evidence and honest uncertainty.