Data Harmonization Python Packages

pycombat

Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects

datastew

Datastew is a python library for intelligent data harmonization using Large Language Model (LLM) vector embeddings.

cpiextract

CPIExtract is a software package to collect and harmonize small molecule and protein interactions with support for stereoisomer matching.

bdi-kit

A toolkit for biomedical data integration and harmonization

nplinker

A python framework for microbial natural products data mining by integrating genomics and metabolomics data

harmonydata

The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.

hamronization

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

celljar

Public battery cell test data, harmonized and sealed in one schema (Parquet + JSON).

bdi-viz

bdi-viz library