Data Harmonization Python Packages

pycombat

Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects

datastew

Python library for intelligent data stewardship using Large Language Model (LLM) embeddings

cpiextract

CPIExtract is a software package to collect and harmonize small molecule and protein interactions with support for stereoisomer matching.

hamronization

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

celljar

Harmonizes battery test datasets into one canonical schema.

bdi-kit

BDI-Kit Library

nplinker

Natural Products Linker

harmonydata

The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.

bdi-viz

bdi-viz library