Data Harmonization Python Packages

datastew

Python library for intelligent data stewardship using Large Language Model (LLM) embeddings

pycombat

Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects

hamronization

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

cpiextract

CPIExtract is a software package to collect and harmonize small molecule and protein interactions with support for stereoisomer matching.

bdi-kit

A toolkit for biomedical data integration and harmonization

nplinker

A python framework for microbial natural products data mining by integrating genomics and metabolomics data

harmonydata

The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.

celljar

Harmonizes battery test datasets into one canonical schema.

bdi-viz

bdi-viz library