PyRank

Cytoscape Python Packages

Python packages with the GitHub topic cytoscape. Sorted by monthly downloads, with stars and forks.
cytoscape
ipycytoscape

A Cytoscape Jupyter widget

28K 290 61
riskportal
risk-network

RISK: a next-generation tool for biological network annotation and visualization

3K 9 1
cytoscape
py4cytoscape

Python library for calling Cytoscape Automation via CyREST

2K 88 16
Pa004
shadowbox

Model the system. Experiment safely. Deterministic what-if simulation for backend architectures — CLI, API and dashboards. Python + TypeScript, local-first, no paid services.

2K 0 0
Pa004
rootline

Trace the change. Find the cause. Evidence-based causal analysis for software regressions — CLI, API and dashboard. Python + TypeScript, local-first, no paid services.

781 0 0
ayhaidar
st-graph-workbench

Interactive graph exploration, analysis, editing, expansion, and progressive loading for Streamlit, powered by Cytoscape.js.

511 0 0
pybel
pybel-cx

A PyBEL extension for interconversion with CX

163 0 0
Avi-141
weft-graph

Local-first knowledge graph for browser tabs. Louvain clustering, PageRank, MCP server for AI assistants, Chrome extension, CLI. 100% private.

147 11 2
iss-world
nautobot-app-vpn

VPN APP

127 4 0
zachary822
pycyrest

A python CyREST library for Cytoscape

118 0 0
minefuto
dash-cytoscape-elements

Python object for dash-cytoscape elements

110 2 0