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Cytometry Python Packages

Python packages with the GitHub topic cytometry. Sorted by relevance, with stars and monthly downloads.
whitews
flowio

A Python library for reading and writing Flow Cytometry Standard (FCS) files

60K 56 22
whitews
flowutils

FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.

16K 20 10
whitews
flowkit

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

10K 211 55
prism-oncology
scyan

Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.

1K 43 2
ZELLMECHANIK-DRESDEN
shapeout

Shape-Out has been superseded by Shape-Out 2.

670 5 5
SimonsonLab
add-labels-to-fcs

This repository includes code for adding data labels to FCS files as additional data channels. It also adds labels a grid that can be gated in standard flow cytometry software.

405 1 0
ghar1821
chronoclust

A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.

211 17 4
mdmanurung
cycombinepy

Robust Integration of Single-Cell Cytometry Datasets

165 0 0
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