Cython Library Python Packages

pyhmmer

Cython bindings and Python interface to HMMER3.

cyscale

Cython SCALE-Codec

picows

Ultra-fast websocket client and server for asyncio

mdl-density-histogram

Cython-accelerated MDL histogram density estimation. Implements Kontkanen & Myllymaki's dynamic programming algorithm for optimal variable-width bins, parametric complexity with Ramanujan approximations, and automatic bin count selection. Based on "MDL Histogram Density Estimation" (JMLR 2007).

pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

pyopal

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

cython-npm

Cython project management like npm in nodejs

cyndilib

A Python wrapper for Newtek NDI® written in Cython

gdmath

🚀Spatium: a fast python spatial math library

pytantan

Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.

pyfastani

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

pymemesuite

Cython bindings and Python interface to the MEME suite.

ugrapheme

Unicode Extended grapheme clusters in nanoseconds

spatium

Spatium: a fast spatial math library

djcompiler

django compiler that compiles the django project to a C language project which gives more performance and more security since the original code is hidden.

cbytesparse

Library to handle sparse bytes within a virtual memory space

pyncbitk

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

pyncbitk-runtime

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

cython-package-example

Example of a package with Cython extensions

faster-os

Up to 6700% faster OS module.

cb85

Cythonized Base85 encoder and decoder.

pyhmmer-arm

Cython bindings and Python interface to HMMER3.