Cython Library Python Packages

pyhmmer

Cython bindings and Python interface to HMMER3.

cyscale

Cython SCALE-Codec

picows

Ultra-fast websocket client and server for asyncio

pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

mdl-density-histogram

Cython-accelerated MDL histogram density estimation. Implements Kontkanen & Myllymaki's dynamic programming algorithm for optimal variable-width bins, parametric complexity with Ramanujan approximations, and automatic bin count selection. Based on "MDL Histogram Density Estimation" (JMLR 2007).

cyndilib

A Python wrapper for Newtek NDI® written in Cython

pyopal

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

gdmath

GdMath: a fast spatial math library [RENAMED TO: Spatium]

cython-npm

Cython project management like npm in nodejs

pyfastani

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

pytantan

Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.

ugrapheme

Unicode Extended grapheme clusters in nanoseconds

pymemesuite

Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.

djcompiler

django compiler that compiles the django project to a C language project which gives more performance and more security since the original code is hidden.

spatium

🚀Spatium: a fast python spatial math library

cbytesparse

Library to handle sparse bytes within a virtual memory space.

pyncbitk

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

pyncbitk-runtime

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

cython-package-example

Example of a package with Cython extensions

faster-os

6800% faster "os" module replacement. A drop-in replacement for Python's standard 'OS' module. Fully-rewritten, optimized, and speeded-up functions, that replace ones in the os.path module.

cb85

Cythonized Base85 encoder and decoder.

pyhmmer-arm

Cython bindings and Python interface to HMMER3.