PyRank

Cwl Python Packages

Python packages with the GitHub topic cwl. Sorted by relevance, with stars and monthly downloads.
common-workflow-language
cwltool

Common Workflow Language reference implementation

326K 371 242
ResearchObject
rocrate

Python library for RO-Crate

236K 83 35
common-workflow-language
cwl-utils

Python utilities for CWL

216K 42 25
common-workflow-language
cwl-upgrader

Upgrade CWL syntax to a newer version

197K 7 4
common-workflow-language
cwltest

Framework for testing CWL tools and workflows

103K 20 18
DataBiosphere
toil

A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

28K 930 246
workflowhub-eu
galaxy2cwl

Standalone version tool to get cwl descriptions (initially an abstract cwl interface) of galaxy workflows and Galaxy workflows executions.

17K 6 6
4dn-dcic
tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

11K 72 28
common-workflow-language
cwlprov

cwlprov: Command line tool and Python API to explore Research Objects containing provenance of Common Workflow Language executions

7K 4 3
rabix
cwlformat

A very opinionated code formatter for CWL

7K 10 4
PMCC-BioinformaticsCore
janis-pipelines

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

4K 44 12
common-workflow-language
cwl-runner

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

4K 1K 193
nfdi4plants
arctrl

Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtimer agnostic contract systems.

3K 20 12
Terradue
cwl2puml

CWL Worflows processor to generate PlantUML diagrams

3K 3 0
common-workflow-language
cwlref-runner

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

3K 1K 193
eoap
cwl2ogc

CWL Worflow inputs/outputs to OGC API Processes inputs/outputs

2K 5 2
rabix
benten

A language server for Common Workflow Language

852 64 9
Duke-GCB
calrissian

CWL runner for Kubernetes

788 52 21
arvados
arvados-pam

Arvados PAM module

739 418 126
Barski-lab
cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

687 194 32
nlppln
nlppln

NLP pipeline software using common workflow language

590 35 3
Terradue
cwl2click

Boostrap a Python CLI using click from a CWL CommandLineTool

338 4 1
arvados
arvados-tools

A single package to install all Arvados client tools

272 418 126
common-workflow-language
cwl-tes

Common workflow language reference implementation backended by a GA4GH Task Execution Service

260 19 26