PyRank

Cwl Python Packages

Python packages with the GitHub topic cwl. Sorted by relevance, with stars and monthly downloads.
common-workflow-language
cwltool

Common Workflow Language reference implementation

257K 372 246
ResearchObject
rocrate

Python library for RO-Crate

221K 84 36
common-workflow-language
cwl-utils

Python utilities for CWL

194K 43 27
common-workflow-language
cwl-upgrader

Upgrade CWL syntax to a newer version

170K 7 4
common-workflow-language
cwltest

Framework for testing CWL tools and workflows

89K 20 18
workflowhub-eu
galaxy2cwl

Standalone version tool to get cwl descriptions (initially an abstract cwl interface) of galaxy workflows and Galaxy workflows executions.

22K 6 7
DataBiosphere
toil

A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

18K 936 246
4dn-dcic
tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

7K 72 28
nfdi4plants
arctrl

Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

7K 21 12
rabix
cwlformat

A very opinionated code formatter for CWL

5K 10 4
common-workflow-language
cwlprov

cwlprov: Command line tool and Python API to explore Research Objects containing provenance of Common Workflow Language executions

3K 4 3
common-workflow-language
cwl-runner

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

3K 1K 193
Terradue
cwl2puml

CWL Worflows processor to generate PlantUML diagrams

3K 3 0
PMCC-BioinformaticsCore
janis-pipelines

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

3K 44 12
eoap
cwl2ogc

CWL Worflow inputs/outputs to OGC API Processes inputs/outputs

2K 5 2
common-workflow-language
cwlref-runner

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

2K 1K 193
Duke-GCB
calrissian

CWL on Kubernetes

821 53 22
arvados
arvados-pam

An open source platform for managing and analyzing biomedical big data

720 419 130
nlppln
nlppln

NLP pipeline software using common workflow language

678 34 3
rabix
benten

A language server for Common Workflow Language

600 64 9
Barski-lab
cwl-airflow

Python package to extend Airflow functionality with CWL v1.1 support

544 194 32
Terradue
cwl2click

Boostrap a Python CLI using click from a CWL CommandLineTool

398 4 1
arvados
arvados-tools

An open source platform for managing and analyzing biomedical big data

284 419 130
nlesc
scriptcwl

Tool to generate CWL workflows

281 40 9