PyRank

Cwl Workflow Python Packages

Python packages with the GitHub topic cwl-workflow. Sorted by monthly downloads, with stars and forks.
Transpiler-Mate
cwl-loader

Simple utilities to load CWL documents in a transparent way

5K 5 1
4dn-dcic
tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

4K 73 29
transpiler-mate
cwl2ogc

Convert CWL inputs and outputs into OGC API – Processes descriptors and JSON Schemas with Transpiler-Mate.

4K 8 2
Transpiler-Mate
cwl2puml

Generate PlantUML diagrams from CWL workflows, with optional PNG and SVG rendering, using Transpiler-Mate.

3K 6 0
Transpiler-Mate
cwl2click

Boostrap a Python CLI using click from a CWL CommandLineTool

2K 7 1
Transpiler-Mate
cwl2ogcrecords

Generate OGC API – Records catalog metadata from CWL workflows with Transpiler-Mate to support discovery and reuse.

1K 3 0
Transpiler-Mate
cwl2markdown

Generate Markdown documentation from CWL workflows and their software metadata with Transpiler-Mate.

1K 5 0
Transpiler-Mate
cwl-baseline-plugin

Compare CWL releases, detect breaking changes, and check semantic version increments with explainable compatibility reports.

870 1 0
Transpiler-Mate
cwl2ro-crate

Package CWL workflows as Workflow RO-Crates and CWLProv execution records as Provenance Run Crates with Transpiler-Mate.

814 2 0
Transpiler-Mate
cwl2citation

Generate CFF, BibTeX, RIS, CSL-JSON, and styled citations from CWL workflow metadata with Transpiler-Mate.

805 3 0
Transpiler-Mate
cwl2sbom

Generate workflow and container CycloneDX SBOMs with Trivy for downstream offline supply-chain assessment.

745 3 0
Transpiler-Mate
cwl2inputs

Generate YAML input templates for CWL workflows and tools using cwltool and Transpiler-Mate.

706 3 0
Transpiler-Mate
cwl2oci

Generate OCI image annotations from CWL processes and software metadata with Transpiler-Mate.

700 3 0
Duke-GCB
calrissian

CWL on Kubernetes

687 54 22
Transpiler-Mate
cwl2codemeta

Convert Schema.org metadata embedded in CWL into CodeMeta JSON-LD with Transpiler-Mate.

611 3 0
Transpiler-Mate
cwl2datacite

Generate DataCite metadata for describing and publishing CWL research software with Transpiler-Mate.

585 4 0
Transpiler-Mate
invenio-publish

Publish research software records, files, and new versions to InvenioRDM and Zenodo with Transpiler-Mate.

481 3 0
ncbi
pm4ngs

Project Manager for NGS data analysis

388 31 10