Cwl Workflow Python Packages

tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

cwl2puml

CWL Worflows processor to generate PlantUML diagrams

cwl2ogc

CWL Worflow inputs/outputs to OGC API Processes inputs/outputs

calrissian

CWL runner for Kubernetes

pm4ngs

Project Manager for NGS data analysis

cwl2click

Boostrap a Python CLI using click from a CWL CommandLineTool