PyRank

Cryo Et Python Packages

Python packages with the GitHub topic cryo-et. Sorted by relevance, with stars and monthly downloads.
hanjinliu
himena-relion

A modern RELION GUI

1K 8 0
chanzuckerberg
octopi

Search for Protein 3D Coordinates in CryoET Tomograms

1K 12 6
Lucaslab-Berkeley
leopard-em

Two-Dimensional Template Matching implemented in Python

1K 16 12
brisvag
blik

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

859 30 10
MPI-Dortmund
tomotwin-cryoet

cryo-ET particle picking by representation and metric learning

438 45 10
scipion-em
scipion-em-membrain

Plugin to run MemBrain software within Scipion

399 0 0
ZhenHuangLab
cryocofi

CarbOn FIlm detector for cryo-EM images

353 0 0
bwmr
napari-segselect

Napari Plugin to clean membrain-seg segmentations

215 2 0
deep-finder
napari-deepfinder

A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.

177 3 1
ZhenHuangLab
imod2relion

A tool reading IMOD points, obtaining particles' info and generating .star file for RELION

167 4 1
gutsche-lab
peepingtom

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

115 30 10
ZhenHuangLab
tbl2star

A tool converting DYNAMO table files(.tbl) to RELION star files(.star)

115 3 0