PyRank

Cryo Et Python Packages

Python packages with the GitHub topic cryo-et. Sorted by monthly downloads, with stars and forks.
gigabit-clowns
vitrio

High throughput Cryo-EM image I/O library for Python

2K 0 0
Lucaslab-Berkeley
leopard-em

Two-Dimensional Template Matching implemented in Python

2K 16 12
brisvag
blik

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

929 30 10
hanjinliu
himena-relion

A modern RELION GUI

658 8 0
Biohub
octopi

Search for Protein 3D Coordinates in CryoET Tomograms

450 19 7
MPI-Dortmund
tomotwin-cryoet

cryo-ET particle picking by representation and metric learning

435 47 11
Scigantic
scigantic-cryoet

Search the CZ CryoET Data Portal from Python -- a catalog and search layer over ~370 public cryo-electron tomography datasets

376 0 0
scipion-em
scipion-em-membrain

Plugin to run MemBrain software within Scipion

242 0 0
ZhenHuangLab
cryocofi

CarbOn FIlm detector for cryo-EM images

201 0 0
bwmr
napari-segselect

Napari Plugin to clean membrain-seg segmentations

107 2 0
gutsche-lab
peepingtom

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

97 30 10
ZhenHuangLab
imod2relion

A tool reading IMOD points, obtaining particles' info and generating .star file for RELION

96 5 2
deep-finder
napari-deepfinder

A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.

89 3 1
ZhenHuangLab
tbl2star

A tool converting DYNAMO table files(.tbl) to RELION star files(.star)

72 3 0