PyRank

Cryo Em Python Packages

Python packages with the GitHub topic cryo-em. Sorted by relevance, with stars and monthly downloads.
cryoem-uoft
cryosparc-tools

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

25K 47 10
haddocking
powerfit-em

Rigid body fitting of atomic strucures in cryo-electron microscopy density maps

7K 23 10
cctbx
cctbx-base

Computational Crystallography Toolbox

5K 285 139
tbepler
topaz-em

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

2K 212 73
hanjinliu
himena-relion

A modern RELION GUI

2K 6 0
azazellochg
mdcatch

Fetch metadata from EPU / SerialEM and launch on-the-fly pre-processing

1K 9 0
jewettaij
superpose3d

register 3D point clouds using rotation, translation, and scale transformations.

1K 44 8
MPI-Dortmund
tomotwin-cryoet

Picking procedure for cryo em tomography

837 44 10
cctbx
cctbx

Computational Crystallography Toolbox

728 285 139
Lucaslab-Berkeley
leopard-em

Two-Dimensional Template Matching implemented in Python

629 16 12
C-CINA
focustools

Python utilities for the FOCUS package

522 6 0
ZhenHuangLab
cryocofi

CarbOn FIlm detector for cryo-EM images

404 0 0
debangshu-mukherjee
cryoblob

Particle Picking of Cryo-EM Datasets

353 0 0
ZhenHuangLab
imod2relion

A tool reading IMOD points, obtaining particles' info and generating .star file for RELION

144 4 1
ZhenHuangLab
tbl2star

A tool converting DYNAMO table files(.tbl) to RELION star files(.star)

108 3 0