Cryo Em Python Packages

cryosparc-tools

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

cctbx-base

Computational Crystallography Toolbox

powerfit-em

Rigid body fitting of atomic strucures in cryo-electron microscopy density maps

topaz-em

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

himena-relion

A modern RELION GUI

diff-em

Differentiable Cryo-EM map fitting in JAX

emap2lig

Official Emap2lig inference pipeline for finding ligand density blobs and building atomic ligand structures in cryo-EM maps.

leopard-em

Two-Dimensional Template Matching implemented in Python

cctbx

Computational Crystallography Toolbox

superpose3d

register 3D point clouds using rotation, translation, and scale transformations.

mdcatch

Fetch metadata from EPU / SerialEM and launch on-the-fly pre-processing

focustools

Python utilities for the FOCUS package

tomotwin-cryoet

cryo-ET particle picking by representation and metric learning

cryoblob

Particle Picking of Cryo-EM Datasets

cryocofi

CarbOn FIlm detector for cryo-EM images

imod2relion

A tool reading IMOD points, obtaining particles' info and generating .star file for RELION

tbl2star

A tool converting DYNAMO table files(.tbl) to RELION star files(.star)