Cromwell Python Packages

pytest-workflow

Configure workflow/pipeline tests using yaml files.

wdl-lsp

Rich IDE support for Workflow Description Language

cromshell

CLI for interacting with Cromwell servers

wdldoc

Create WDL documentation using Markdown.

methseq

Automation tool for high-throughput sequencing DNA methylation data

cromshell-draft-release

CLI for interacting with Cromwell servers

choppy-pipe

An integrated analysis platform for efficiently achieving computational reproducibility

espresso-caller

Automated and reproducible tool for identifying genomic variants at scale ☕️