Crispr Cas9 Python Packages

screenpro2

Flexible analysis of high-content CRISPR screening

cctyper

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

crisprzip

A kinetic model of CRISPR-Cas target recognition.

crispresso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

cassiopeia-lineage

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

crispr-cats

Comparing Cas Activities by Target Superimposition - find genomic regions nearby two distinct sequences of interest.

genome-atlas

Unified knowledge graph and embedding space for programmable genome-writing enzymes

acrcasppi-ml

Prediction of protein-protein interaction between anti-crispr protein (acr) and CRISPR-associated (cas) protein using machine learning algorithm

mech-class

Mechanism-aware classification of DNA-modifying enzymes

biodive

A reference-free statistical approach to diversity-generating & mobile genetic element discovery

crispr-cas9

script for indels counting in sequencing data

pen-score

Physics-informed scoring function for non-destructive genome-writing potential

pycrispr

A package for CRISPR-Cas9 screen analysis

crispr-da

Adapting CRISPR gRNA design for detection assays.