PyRank

Cooler Python Packages

Python packages with the GitHub topic cooler. Sorted by monthly downloads, with stars and forks.
open2c
cooler

A cool place to store your Hi-C

14K 245 62
4dn-dcic
hic2cool

Lightweight converter between hic and cool contact matrices.

911 74 11
XiaoTaoWang
tadlib

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

721 45 13
XiaoTaoWang
runhic

An easy-to-use Hi-C data processing software supporting distributed computation.

492 66 24
XiaoTaoWang
hicpeaks

A Python implementation for BH-FDR and HiCCUPS

281 55 11
cellular-genomics
firecaller

FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data

87 5 1
XiaoTaoWang
stripecaller

A toolkit for analyzing architectural stripes

80 23 2