PyRank

Cooler Python Packages

Python packages with the GitHub topic cooler. Sorted by relevance, with stars and monthly downloads.
open2c
cooler

A cool place to store your Hi-C

15K 237 60
4dn-dcic
hic2cool

Lightweight converter between hic and cool contact matrices.

3K 74 10
XiaoTaoWang
tadlib

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

1K 45 12
XiaoTaoWang
runhic

An easy-to-use Hi-C data processing software supporting distributed computation.

603 62 23
XiaoTaoWang
hicpeaks

A Python implementation for BH-FDR and HiCCUPS

402 54 11
cellular-genomics
firecaller

FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data

160 5 1
XiaoTaoWang
stripecaller

Automated Stripe Identification from contact matrix.

115 22 2