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Contigs Python Packages

Python packages with the GitHub topic contigs. Sorted by monthly downloads, with stars and forks.
oschwengers
cb-platon

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

362 130 16
schultzm
pandoo

Pandoo: a pipeline of tools for bacterial genomics.

290 1 2
metagentools
graphbin

✨🧬 Refined binning of metagenomic contigs using assembly graphs

228 97 10
metagentools
graphbin2

☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

193 37 4
lpryszcz
redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

127 188 23
smaegol
plasflow

Software for prediction of plasmid sequences in metagenomic assemblies

98 111 27
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology