PyRank

Contact Matrix Python Packages

Python packages with the GitHub topic contact-matrix. Sorted by relevance, with stars and monthly downloads.
open2c
cooler

A cool place to store your Hi-C

16K 241 60
Siegel-Lab
libbiosmoother

On-the-fly processing and visualization of interactome data.

3K 0 1
open2c
coolpuppy

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

847 82 12
XiaoTaoWang
tadlib

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

726 45 12
KnowledgeEdgeAI
dp-epidemiology

A package for differential private release of fianancial data in context of epidemiology

695 2 0
XiaoTaoWang
hicpeaks

A Python implementation for BH-FDR and HiCCUPS

477 54 11
XiaoTaoWang
stripecaller

Automated Stripe Identification from contact matrix.

152 22 2