Contact Matrix Python Packages

cooler

A cool place to store your Hi-C

libbiosmoother

On-the-fly processing and visualization of interactome data.

tadlib

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

dp-epidemiology

A Privacy Enhanced Tool for predicting hotspot areas during pandemic, analyzing consumption trends and estimating contact matrix.

coolpuppy

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

hicpeaks

A Python implementation for BH-FDR and HiCCUPS

stripecaller

Automated Stripe Identification from contact matrix.