PyRank

Contact Matrix Python Packages

Python packages with the GitHub topic contact-matrix. Sorted by monthly downloads, with stars and forks.
open2c
cooler

A cool place to store your Hi-C

14K 245 62
Siegel-Lab
libbiosmoother

On-the-fly processing and visualization of interactome data.

2K 0 1
XiaoTaoWang
tadlib

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

721 45 13
KnowledgeEdgeAI
dp-epidemiology

A Privacy Enhanced Tool for predicting hotspot areas during pandemic, analyzing consumption trends and estimating contact matrix.

596 3 0
open2c
coolpuppy

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

486 82 12
XiaoTaoWang
hicpeaks

A Python implementation for BH-FDR and HiCCUPS

281 55 11
XiaoTaoWang
stripecaller

A toolkit for analyzing architectural stripes

80 23 2