Constraint Based Modeling Python Packages

pycsp3

A Python Library for modeling combinatorial constrained problems

gba

Growth Balance Analysis for Python

cbmpy

CBMPy is a Python based platform for constraint based modelling and analysis.

biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

pipegem

Python package for integrating omics data with genome-scale metabolic models and running comparative constraint-based metabolic analysis.

cebpostagger

Rule-Based Cebuano POS Tagger using Constraint-Based Grammar

efmtool-link

Exposes various efmtool functionality in Python.

miom

Constraint-based modeling of metabolism using Mixed Integer Optimization

cnapy

An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

optlang-enumerator

Module for enumerating minimal cut sets

pymcadre

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

ssbio

A Python framework for structural systems biology