Constraint Based Modeling Python Packages

pycsp3

A Python Library for modeling combinatorial constrained problems

2K 85 11

gba

Growth Balance Analysis for Python

1K 1 1

cbmpy

CBMPy is a Python based platform for constraint based modelling and analysis.

1K 20 4

biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

735 2 0

cnapy

An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

451 68 18

miom

Mixed Integer Optimization for Metabolism

385 12 2

optlang-enumerator

Module for enumerating minimal cut sets

311 3 1

ssbio

Tools to enable structural systems biology

289 109 30

pymcadre

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

271 14 7

cebpostagger

Rule-Based Cebuano POS Tagger Using Constraint-Based Grammar and Affixing Rules

266 5 6

efmtool-link

Exposes various efmtool functionality in Python.

250 0 0

pipegem

Processing and integrating data with genome-scale metabolic models (GEM)

227 0 2