Constraint Based Modeling Python Packages

pycsp3

Modeling Constrained Combinatorial Problems in Python

2K 82 11

cbmpy

CBMPy is a Python based platform for constraint based modelling and analysis.

1K 20 4

biosimulators-cobrapy

BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencobra.github.io/cobrapy/>.

1K 2 0

cnapy

An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

546 66 18

pipegem

Processing and integrating data with genome-scale metabolic models (GEM)

482 0 2

miom

Mixed Integer Optimization for Metabolism

360 12 2

ssbio

A Python framework for structural systems biology

359 109 30

pymcadre

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

281 14 7

optlang-enumerator

Module for enumerating minimal cut sets

264 3 1

gba

Growth Balance Analysis for Python

235 1 1

efmtool-link

Exposes various efmtool functionality in Python.

215 0 0

cebpostagger

Rule-Based Cebuano POS Tagger using Constraint-Based Grammar

183 5 6