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Constraint Based Modeling Python Packages

Python packages with the GitHub topic constraint-based-modeling. Sorted by relevance, with stars and monthly downloads.
xcsp3team
pycsp3

Modeling Constrained Combinatorial Problems in Python

2K 82 11
SystemsBioinformatics
cbmpy

CBMPy is a Python based platform for constraint based modelling and analysis.

1K 20 4
biosimulators
biosimulators-cobrapy

BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencobra.github.io/cobrapy/>.

1K 2 0
cnapy-org
cnapy

An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

546 66 18
qwerty239qwe
pipegem

Processing and integrating data with genome-scale metabolic models (GEM)

482 0 2
MetExplore
miom

Mixed Integer Optimization for Metabolism

360 12 2
SBRG
ssbio

A Python framework for structural systems biology

359 109 30
draeger-lab
pymcadre

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

281 14 7
cnapy-org
optlang-enumerator

Module for enumerating minimal cut sets

264 3 1
charlesrocabert
gba

Growth Balance Analysis for Python

235 1 1
cnapy-org
efmtool-link

Exposes various efmtool functionality in Python.

215 0 0
ajrequina
cebpostagger

Rule-Based Cebuano POS Tagger using Constraint-Based Grammar

183 5 6
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