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Connectome Python Packages

Python packages with the GitHub topic connectome. Sorted by relevance, with stars and monthly downloads.
navis-org
navis

Python library for analysis of neuroanatomical data.

4K 115 36
navis-org
fafbseg

Tools to work with the FlyWire connectome. Fully interoperable with navis.

3K 22 9
BlueBrain
brain-indexer

Create indexes of simple shapes and find all indexed elements that intersect with a query region.

2K 1 1
seung-lab
chunkflow

Composable image chunk operators to create pipeline for distributed computation.

748 54 10
connectomicslab
connectomemapper

Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping

439 83 31
makism
dyconnmap

A dynamic connectome mapping module in Python

214 112 30
quhaichao
spacon

SpaCon, a deep-learning method that integrates spatial transcriptomic data with connectomic data to identify functionally relevant brain domains defined by both their molecular makeup and shared connectivity.

171 2 1
neurodata
neuropull

A (soon to be) lightweight Python package for accessing single-cell connectome networks with metadata.

147 2 0
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