Connectome Python Packages

navis

Python library for analysis of neuroanatomical data.

fafbseg

Tools to work with the FlyWire connectome. Fully interoperable with navis.

brain-indexer

Create indexes of simple shapes and find all indexed elements that intersect with a query region.

chunkflow

Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

connectomemapper

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

dyconnmap

A dynamic connectome mapping module in Python

spacon

SpaCon, a deep-learning method that integrates spatial transcriptomic data with connectomic data to identify functionally relevant brain domains defined by both their molecular makeup and shared connectivity.

neuropull

A lightweight tool for pulling connectome networks and metadata.