Connectome Python Packages

navis

Python library for analysis of neuroanatomical data.

fafbseg

Tools to work with the FlyWire connectome. Fully interoperable with navis.

brain-indexer

Create indexes of simple shapes and find all indexed elements that intersect with a query region.

chunkflow

Composable image chunk operators to create pipeline for distributed computation.

connectomemapper

Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping

dyconnmap

A dynamic connectome mapping module in Python

spacon

SpaCon, a deep-learning method that integrates spatial transcriptomic data with connectomic data to identify functionally relevant brain domains defined by both their molecular makeup and shared connectivity.

neuropull

A (soon to be) lightweight Python package for accessing single-cell connectome networks with metadata.