PyRank

Combine Python Packages

Python packages with the GitHub topic combine. Sorted by monthly downloads, with stars and forks.
fbergmann
python-libsedml

SED-ML library based on libSBML

29K 9 13
biosimulators
biosimulators-utils

Utilities for building standardized command-line interfaces for biosimulation software packages

10K 5 7
NuML
python-libnuml

Numerical Markup Language

9K 5 8
matthiaskoenig
pymetadata

Python utilities for working with metadata and COMBINE archives

8K 6 3
SED-ML
kisao

Ontology of algorithms for analyzing biological models, their parameters, and their outputs

6K 12 0
maurosilber
biomodels

Python library to download and cache models from BioModels

3K 3 0
matthiaskoenig
libsbgnpy

Python library for SBGN

3K 12 1
aaurelions
combicode

📦 A CLI tool to combine a project's codebase into a single file for LLM context.

967 35 1
biosimulators
biosimulators-amici

AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

906 3 1
biosimulators
biosimulators-pysces

PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

882 2 0
thekaveh
vmx

Spec-driven, lifecycle-aware MVVM/ViewModel framework for C#, Python, TypeScript, Swift, and Rust. One language-neutral VMx spec, five catalog-complete flavors, shared reactive contracts, and 408 conformance IDs.

865 1 0
biosimulators
biosimulators-boolnet

BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

590 0 0
biosimulators
biosimulators-cbmpy

CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

487 0 0
biosimulators
biosimulators-pyneuroml

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

430 1 0
biosimulators
biosimulators-xpp

XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

401 0 1
biosimulators
biosimulators-masspy

MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

397 1 0
biosimulators
biosimulators-opencor

OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container

377 0 1
NuML
tenuml

Numerical Markup Language

347 5 8
biosimulators
biosimulators-ginsim

GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

298 0 0
biosimulations
biosimulations-bigg

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

181 1 0
biosimulators
biosimulators-rbapy

RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

176 0 0
biosimulations
biosimulations-modeldb

Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations

139 0 0