PyRank

Combine Python Packages

Python packages with the GitHub topic combine. Sorted by relevance, with stars and monthly downloads.
fbergmann
python-libsedml

SED-ML library based on libSBML

15K 9 13
NuML
python-libnuml

Numerical Markup Language

10K 5 8
biosimulators
biosimulators-utils

Utilities for building standardized command-line interfaces for biosimulation software packages

9K 4 6
SED-ML
kisao

Ontology of algorithms for analyzing biological models, their parameters, and their outputs

3K 12 0
maurosilber
biomodels

Python library to download and cache models from BioModels

1K 2 0
biosimulators
biosimulators-amici

BioSimulators-compliant command-line interface to the AMICI simulation program <https://github.com/AMICI-dev/amici>.

1K 3 1
biosimulators
biosimulators-pysces

BioSimulators-compliant command-line interface to the PySCeS simulation program <http://pysces.sourceforge.net/>.

1K 2 0
biosimulators
biosimulators-boolnet

BioSimulators-compliant command-line interface to the BoolNet simulation program.

883 0 0
biosimulations
biosimulations-modeldb

Command-line program for publishing the ModelDB model repository to BioSimulations.

873 0 0
biosimulators
biosimulators-pyneuroml

BioSimulators-compliant command-line interface to the jNeuroML/pyNeuroML, NEURON, and NetPyNe simulation programs.

795 1 0
biosimulators
biosimulators-cbmpy

BioSimulators-compliant command-line interface to the CBMPy simulation program <http://cbmpy.sourceforge.net/>.

750 0 0
aaurelions
combicode

A CLI tool to combine a project's codebase into a single file for LLM context with expanded code map.

709 35 1
biosimulators
biosimulators-xpp

BioSimulators-compliant command-line interface to the XPP simulation program.

697 0 1
NuML
tenuml

Numerical Markup Language

679 5 8
biosimulators
biosimulators-masspy

BioSimulators-compliant command-line interface to the MassPY simulation program <https://masspy.readthedocs.io/>.

632 1 0
biosimulators
biosimulators-opencor

BioSimulators-compliant command-line interface to the OpenCOR simulation program.

620 0 1
biosimulators
biosimulators-ginsim

GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

489 0 0
biosimulations
biosimulations-bigg

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

345 1 0
biosimulators
biosimulators-rbapy

RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

304 0 0