PyRank

Codon Optimization Python Packages

Python packages with the GitHub topic codon-optimization. Sorted by monthly downloads, with stars and forks.
Edinburgh-Genome-Foundry
python-codon-tables

:bar_chart: Codon usage tables in code-friendly format + Python bindings

42K 43 11
Edinburgh-Genome-Foundry
dnachisel

:pencil2: A versatile DNA sequence optimizer

34K 282 53
rollroyces
mrnavax

Practical Python tools for the AI-leverage layers in mRNA cancer therapy. Stdlib-only: codon optimization, neoantigen screening, TrialGPT-style trial matching, and LNP composition advice.

12K 0 0
adibvafa
codontransformer

CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression

2K 227 36
eijex
factorforge-cds

Open-source CDS design and pre-synthesis sequence review for plant gene constructs.

2K 5 2
itamar-menuhin
evolutionary-stability-optimizer

ESO - detects and removes hypermutable sites (recombination, slippage, methylation hotspots) from engineered DNA sequences while preserving translation and codon usage.

514 0 0
koeng101
dnadesign

A lua package for designing DNA.

439 38 1
retospect
phagetrix

Phage library sequence generator with degenerate basepairs.

425 2 0