Cobrapy Python Packages

riptide

Reaction Inclusion by Parsimony and Transcript Distribution

micom

Python package to study microbial communities using metabolic modeling.

modelseedpy

Python package for building and analyzing models using ModelSEED

modelseedpy-freiburgermsu

Python package for building and analyzing models using ModelSEED

biosimulators-cobrapy

BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencobra.github.io/cobrapy/>.

straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

corda

Genome-scale model construction with CORDA

efmlrs

Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs

findcpcore

findCP core package - find ChokePoint reactions in genome-scale metabolic models

miom

Mixed Integer Optimization for Metabolism

ssbio

A Python framework for structural systems biology

findcpcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

contrabass

Constraint-based model vulnerabilities analysis

multitfa

Multivariate thermodynamics-based metabolic flux analysis in Python.