Cobrapy Python Packages

micom

Python package to study microbial communities using metabolic modeling.

riptide

Reaction Inclusion by Parsimony and Transcript Distribution (RIPTiDe)

modelseedpy

Python package for building and analyzing models using ModelSEED

modelseedpy-freiburgermsu

Python package for building and analyzing models using ModelSEED

straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

efmlrs

Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs

corda

Genome-scale model construction with CORDA

findcpcore

findCP core package - find ChokePoint reactions in genome-scale metabolic models

miom

Mixed Integer Optimization for Metabolism

findcpcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

ssbio

Tools to enable structural systems biology

contrabass

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

multitfa

Multivariate thermodynamics-based metabolic flux analysis in Python.

parmmosahn

PaRMMoSaHN - Pangenome Reference-based Metabolic Modelling by Saving Homolog Networks