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Cobrapy Python Packages

Python packages with the GitHub topic cobrapy. Sorted by relevance, with stars and monthly downloads.
mjenior
riptide

Reaction Inclusion by Parsimony and Transcript Distribution

5K 13 7
micom-dev
micom

Python package to study microbial communities using metabolic modeling.

3K 128 23
ModelSEED
modelseedpy

Python package for building and analyzing models using ModelSEED

1K 27 20
ModelSEED
modelseedpy-freiburgermsu

Python package for building and analyzing models using ModelSEED

1K 27 20
biosimulators
biosimulators-cobrapy

BioSimulators-compliant command-line interface to the COBRApy simulation program <https://opencobra.github.io/cobrapy/>.

1K 2 0
klamt-lab
straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

791 50 7
cdiener
corda

Genome-scale model construction with CORDA

592 25 8
BeeAnka
efmlrs

Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs

514 6 1
findCP
findcpcore

findCP core package - find ChokePoint reactions in genome-scale metabolic models

445 1 0
MetExplore
miom

Mixed Integer Optimization for Metabolism

360 12 2
SBRG
ssbio

A Python framework for structural systems biology

359 109 30
findCP
findcpcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

327 3 0
openCONTRABASS
contrabass

Constraint-based model vulnerabilities analysis

244 3 1
biosustain
multitfa

Multivariate thermodynamics-based metabolic flux analysis in Python.

169 9 3
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