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Coalescent Python Packages

Python packages with the GitHub topic coalescent. Sorted by monthly downloads, with stars and forks.
tskit-dev
msprime

Simulate ARGs and genomic sequence data using population genetic models

28K 218 94
sdtemple
isweep

Statistical inference of recent positive selection using IBD segments

323 14 0
ytabatabaee
qrstar

Rooting species trees under the multi-species coalescent model

133 3 1
LohseLab
agemo

Laplace transformed coalescence time distributions

122 5 3
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology