Clustering Algorithm Python Packages

hdbscan

A high performance implementation of HDBSCAN clustering.

kmodes

Python implementations of the k-modes and k-prototypes clustering algorithms, for clustering categorical data

infomap

Multi-level network clustering based on the Map Equation

scikit-clarans

Scikit-learn compatible CLARANS clustering

lumbermark

Lumbermark: Resistant Clustering via Chopping Up Mutual Reachability Minimum Spanning Trees

fuzzy-c-means

A simple python implementation of Fuzzy C-means algorithm.

genieclust

Genie: Fast and Robust Hierarchical Clustering

bblean

BitBIRCH-Lean, a memory-efficient implementation of BitBIRCH designed for high-throughput clustering of huge molecular libraries

aisp

Artificial Immune Systems Package (AISP) is an open-source Python library that features bio-inspired algorithms based on artificial immune systems for machine learning, pattern recognition, anomaly detection, and optimization tasks.

pytomato

A pure-Python implementation of the ToMATo clustering algorithm.

druhg

Dialectical Reflection Universal Hierarchical Grouping (друг)

persistable-clustering

density-based clustering for exploratory data analysis based on multi-parameter persistence

fast-plscan

A fast multi-core implementation of the PLSCAN clustering algorithm.

hdbscan-rs

High-performance HDBSCAN clustering in Rust

hdbscan-314

A high performance implementation of HDBSCAN clustering.

bf44-hdbscan-0844

A high performance implementation of HDBSCAN clustering.

finchpy

A Python implementation of "FINCH Clustering Algorithm (CVPR 2019)"

spherecluster

Clustering routines for the unit sphere

shgo

Simplicial Homology Global Optimization

cake-ensemble

Confidence in Assignments via K-partition Ensembles

vieclus

Vienna Graph Clustering

itclust

Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis

clustering-algorithms

K-means and C-means experiments with Numpy

adenine

ADENINE: A Data ExploratioN PipelINE