Cluster Analysis Python Packages

hdbscan

A high performance implementation of HDBSCAN clustering.

sequenzo

A fast, scalable, and intuitive Python package in sequence analysis.

genieclust

Genie: Fast and Robust Hierarchical Clustering

quitefastmst

quitefastmst: Euclidean and Mutual Reachability Minimum Spanning Trees

pyclustertend

A python package to assess cluster tendency

trcc

TRCC — T-Regulated Cytokine Clustering: density-peak clustering with path-density mutual-reachability merging

hdbscan-314

A high performance implementation of HDBSCAN clustering.

cake-ensemble

Confidence in Assignments via K-partition Ensembles

hopkins-statistic

A Python package for computing the Hopkins statistic to assess clustering tendency.

lumbermark

Lumbermark: Resistant Clustering via Chopping Up Mutual Reachability Minimum Spanning Trees

s-dbw

Compute the S_Dbw validity index

sil-score

Exact and approximate silhouette scoring with micro, macro, and cluster-weighted averages.

clustering-benchmarks

A Framework for Benchmarking Clustering Algorithms

gpmix

A library for efficient uncovering of latent cluster labels in functional data from Gaussian process mixtures.

finchpy

FINCH - First Integer Neighbor Clustering Hierarchy Algorithm

persistable-clustering

density-based clustering for exploratory data analysis based on multi-parameter persistence

clusterking

Cluster sets of histograms/curves, in particular kinematic distributions in high energy physics.

cluster-ss

Python cluster-ss Package

edtools

Collection of tools for automated processing and clustering of electron diffraction data

bambird

BAM, unsupervised labelling function to extract and cluster similar animal vocalizations together

silhouette-upper-bound

An upper bound of the Average Silhouette Width

localclustering

Python 3 implementation and documentation of the Hermina-Janos local graph clustering algorithm.

composite-silhouette

A robust clustering evaluation framework that combines micro- and macro-averaged silhouette scores into a composite metric using statistical weighting.

categorical-cluster

A package for clustering categorical data