Clinical Python Packages

medpython

Medial Research Libs Infrastructure

fedbiomed

A collaborative learning framework for empowering biomedical research

imednet

A Unofficial Python SDK that makes it easy to work with the iMednet REST API from your code or the command line. Manage studies, subjects, records, and more with a "friendly" interface. No need to worry about the low-level details.

preclinical

CLI and SDK for the Preclinical healthcare AI agent testing platform

charger

Characterization of Germline variants

zensols-mimicsid

This repository contains the a Python package to automatically segment and identify sections of clinical notes, such as electronic health record (EHR) medical documents.

torchmimic

PyTorch library for MIMIC III Benchmark experiments

zensols-clinicamr

Clincial Domain Abstract Meaning Representation Graphs

medpython-etl

Medial EarlySign ETL Library

eyetrace

Open-source toolkit for ocular metrics and fatigue detection

microsalt

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

sobolev-alignment

Sobolev alignment of deep probabilistic models for comparing single cell profiles

zensols-dsprov

Provenience of discharge summaries Pythonic access (BioNLP paper)