Clinical Trials Python Packages

biomcp-python

BioMCP: Biomedical Model Context Protocol

mrnavax

Practical Python tools for the AI-leverage layers in mRNA cancer therapy. Stdlib-only: codon optimization, neoantigen screening, TrialGPT-style trial matching, and LNP composition advice.

pyomop

Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.

edc

A framework for multisite longitudinal clinical trials built on Django

biomcp-cli

BioMCP: Biomedical Model Context Protocol

pytrials

Python package that wraps around the ClinicalTrials.gov API

edc-appointment

Add scheduled study appointments and appointment management to your clinical trial app

opentargets-mira

Multi-source Indication & Report Analytics

clinicaltrials-downloader

Download and process ClinicalTrials.gov

effect-edc

Fluconazole plus flucytosine vs. fluconazole alone for cryptococcal antigen-positive patients identified through screening: A phase III randomised controlled trial

ambition-subject

(P.I. Joe Jarvis) Subject models and views for Ambition

edc-visit-tracking

Track study participant visits and ensure documented cover for all data collection on participants

edc-adverse-event

Adverse Event classes

edc-dashboard

Core classes for dashboards in clincedc/edc projects. e.g. Listboard, SubjectDashboard

edc-data-manager

Data manager administrative models and classes

edc-lab

Lab module to Receive, Process, Pack, Verify, Ship

lixplore-cli

A Unix-inspired command-line tool for searching scientific literature, built for terminal users who want speed, automation and minimal interfaces. Search PubMed, arXiv, Crossref, DOAJ and Europe PMC in one command, deduplicate results, export to BibTeX/RIS/CSV and more, and get new-paper alerts on email, Telegram, Slack and 14 other channels.

edc-export

Export Edc models to CSV

rtflite

Lightweight RTF composer for Python. Specializes in precise formatting of production-quality tables and figures.

edc-pdutils

Use pandas with the Edc

edc-locator

Simple base classes for participant locator form and processes

pharmadata

CDISC SDTM and ADaM Test Datasets in Python

edc-registration

Add a master patient record and registration services to your app

trialmatchai

TrialMatchAI leverages large language models to streamline clinical trial matching by evaluating patient-specific clinical characteristics against trial eligibility criteria and generating relevant, ranked trial recommendations.