Clinical Research Python Packages

tableone

Create "Table 1" for research papers in Python

edc

EDC core modules for clinicedc/edc projects

ambition-edc

(P.I. Joe Jarvis) High Dose AMBISOME on a Fluconazole Backbone for Cryptococcal Meningitis Induction Therapy in sub-Saharan Africa: A Phase 3 Randomised Controlled Non-Inferiority Trial

effect-edc

Fluconazole plus flucytosine vs. fluconazole alone for cryptococcal antigen-positive patients identified through screening: A phase III randomised controlled trial

edc-visit-schedule

Define data collection schedules for CRFs and Requisitions.

pyhealth

A Deep Learning Python Toolkit for Healthcare Applications.

edc-visit-tracking

Track study participant visits and ensure documented cover for all data collection on participants

edc-lab

Lab module to Receive, Process, Pack, Verify, Ship

edc-export

Export Edc models to CSV

edc-data-manager

Data manager administrative models and classes

edc-locator

Simple base classes for participant locator form and processes

edc-pdutils

Use pandas with the Edc

edc-reportable

Reportable clinic events, reference ranges, grading

django-collect-offline

Deploy a Django app as a client on a laptop that is offline and securely sync the data with your server when you get back online.

pycyclops

Framework for healthcare ML implementation

m4-infra

Give your AI agents clinical database access, research automation, and clinician-reviewed domain knowledge for MIMIC-IV, eICU, and more.

castoredc-api

Python Wrapper for Castor EDC API

pysummaries

Generate beautiful summary tables from pandas, polars or pyarrow dataframes

castorapi

Python API wrapper for Castor EDC to fetch data from you clinical study

macpie

A Python library and command line tool for clinical research data analysis.