Clinical Research Python Packages

tableone

Create "Table 1" for research papers in Python

edc

A framework for multisite longitudinal clinical trials built on Django

ambition-edc

(P.I. Joe Jarvis) High Dose AMBISOME on a Fluconazole Backbone for Cryptococcal Meningitis Induction Therapy in sub-Saharan Africa: A Phase 3 Randomised Controlled Non-Inferiority Trial

edc-visit-schedule

Define data collection schedules for CRFs and Requisitions.

pyhealth

A Deep Learning Python Toolkit for Healthcare Applications.

effect-edc

Fluconazole plus flucytosine vs. fluconazole alone for cryptococcal antigen-positive patients identified through screening: A phase III randomised controlled trial

edc-visit-tracking

Track study participant visits and ensure documented cover for all data collection on participants

edc-data-manager

Data manager administrative models and classes

edc-lab

Lab module to Receive, Process, Pack, Verify, Ship

pycyclops

A toolkit for evaluating and monitoring AI models in clinical settings

edc-export

Export Edc models to CSV

edc-pdutils

Use pandas with the Edc

edc-locator

Simple base classes for participant locator form and processes

m4-infra

Give your AI agents clinical database access, research automation, and clinician-reviewed domain knowledge for MIMIC-IV, eICU, and more.

edc-reportable

Reportable clinic events, reference ranges, grading

castoredc-api

Python Wrapper for Castor EDC API

django-collect-offline

Deploy a Django app as a client on a laptop that is offline and securely sync the data with your server when you get back online.

psdl-lang

PSDL — Patient Scenario Definition Language: portable, reproducible clinical scenario and cohort definitions over OMOP CDM. Part of the Prometheno open-protocol stack (HAVEN · PSDL · VERITAS).

castorapi

Python API wrapper for Castor EDC to fetch data from you clinical study

pysummaries

Generate beautiful summary tables from pandas, polars or pyarrow dataframes

macpie

A Python library and command line tool for clinical research data analysis.