Clinical Nlp Python Packages

medspacy

Library for clinical NLP with spaCy.

ehrextract

Structured feature extraction from clinical notes with LLMs — local HuggingFace (LoRA adapters), OpenAI-compatible, and Anthropic providers

bh-sentinel-ml

Open-source clinical safety signal detection for behavioral health systems. Text in. Flags out. Clinician decides.

pat2vec

A comprehensive Python package for healthcare data engineering, designed to extract, transform, and feature engineer patient data from CogStack-based EHR datalakes. Enables patient-level aggregation, longitudinal time series construction (up to 25 years retrospective), flexiblefeature engineering (biochemistry, demographics, medications, diagnoses

belgian-deduce

Python package for rule-based de-identification of Belgian clinical text

bh-sentinel-core

Open-source clinical safety signal detection for behavioral health systems. Text in. Flags out. Clinician decides.

multiversity

Open-source multimodal dataset: 98K+ clinical cases & 139K+ medical images from PubMed Central

forte-health

NLP pipeline framework for biomedical and clinical domains