PyRank

Cis Regulatory Elements Python Packages

Python packages with the GitHub topic cis-regulatory-elements. Sorted by relevance, with stars and monthly downloads.
cantinilab
circe-py

Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.

2K 35 2
thirtysix
tfbs-footprinting

Pipeline: Identification of cis-regulatory elements by matrix scoring and conservation.

2K 3 0
thirtysix
tfbs-footprinting3

Tool for identifying conserved TFBSs in vertebrate species.

700 4 0