PyRank

Chromatin Python Packages

Python packages with the GitHub topic chromatin. Sorted by relevance, with stars and monthly downloads.
nolan-h-hamilton
consenrich

Genome-wide extraction of real-valued signals hidden in noisy multisample HTS data

17K 8 2
open2c
cooler

A cool place to store your Hi-C

16K 241 60
nolan-h-hamilton
rocco

Multisample Consensus Peak Calling via Convex Optimization

2K 9 0
XiaoTaoWang
tadlib

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

726 45 12
XiaoTaoWang
hicpeaks

A Python implementation for BH-FDR and HiCCUPS

477 54 11
vaquerizaslab
chess-hic

Quantitative comparison and automatic feature extraction for chromatin contact data.

393 27 6
meuleman
epilogos

Methods for summarizing and visualizing multi-biosample functional genomic annotations

315 48 5
tanjimin
corigami

C.Origami: cell type-specific chromatin structure prediction.

131 87 14
tanjimin
corigami-demo

C.Origami: cell type-specific chromatin structure prediction.

123 87 14
gtca
chame

Chromatin accessibility module

111 4 0