PyRank

Chromatin Python Packages

Python packages with the GitHub topic chromatin. Sorted by monthly downloads, with stars and forks.
nolan-h-hamilton
consenrich

Genome-wide extraction of real-valued signals hidden in noisy multisample HTS data

17K 8 2
open2c
cooler

A cool place to store your Hi-C

14K 245 62
nolan-h-hamilton
rocco

Robust Open Chromatin Detection via Convex Optimization: Multisample Consensus Peak Calling

4K 11 0
XiaoTaoWang
tadlib

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

721 45 13
vaquerizaslab
chess-hic

Comparison of Hi-C Experiments using Structural Similarity.

307 27 6
XiaoTaoWang
hicpeaks

A Python implementation for BH-FDR and HiCCUPS

281 55 11
meuleman
epilogos

Methods for summarizing and visualizing multi-biosample functional genomic annotations

149 49 5
tanjimin
corigami

C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.

68 88 15
gtca
chame

Chromatin analysis module

59 4 0
tanjimin
corigami-demo

C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.

52 88 15