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Chip Seq Python Packages

Python packages with the GitHub topic chip-seq. Sorted by relevance, with stars and monthly downloads.
deeptools
deeptools

Tools to process and analyze deep sequencing data.

14K 760 221
macs3-project
macs3

MACS -- Model-based Analysis of ChIP-Seq

6K 776 273
macs3-project
macs2

MACS -- Model-based Analysis of ChIP-Seq

5K 776 273
nolan-h-hamilton
rocco

Robust Open Chromatin Detection via Convex Optimization: Multisample Consensus Peak Calling

3K 9 0
CostaLab
rgt

Toolkit to perform regulatory genomics data analysis

1K 113 29
ronin-gw
pymasc

Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq.

1K 2 0
dputhier
pygtftk

The Python GTF toolkit (pygtftk) package: easy handling of GTF files

1K 52 6
endrebak
bioepic

Chip-Seq broad peak/domain finder.

1K 31 6
Genome-Function-Initiative-Oxford
zen-norm

ZEN-norm is a Python package for normalising bigWigs of genomic signal, reversing prior normalisation and benchmarking normalisation method performance.

697 1 0
afrendeiro
ngs-toolkit

A toolkit for NGS analysis with Python

684 14 4
saketkc
moca

Tool for motif conservation analysis

420 9 0
shao-lab
manorm

A robust model for quantitative comparison of ChIP-Seq data sets.

385 22 7
TheJacksonLaboratory
pybedgraph

A Python package for fast operations on 1-dimensional genomic signal tracks

360 23 2
hanjunlee21
panchip

Pan-ChIP-seq Analysis of Peak Sets

306 0 2
shao-lab
mamotif

An integrative toolkit for detecting cell type-specific regulators

227 2 0
Boyle-Lab
fseq2

Improving the feature density based peak caller with dynamic statistics

203 7 1
tushiqi
manorm2-utils

To pre-process a set of ChIP-seq samples and coordinate with MAnorm2 for differential analysis

151 8 4
MiraldiLab
maxatac

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

136 30 11
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